Showing posts with label scientists. Show all posts
Showing posts with label scientists. Show all posts

Cassini testing for water on one of Saturn's moons

Wednesday, March 12, 2008

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LOS ANGELES, California (AP) -- Three years after gigantic geysers were spied on an icy Saturn moon, the international Cassini spacecraft is poised to plunge through the fringes of the mysterious plumes to learn how they formed.

An unmanned probe will sweep through geysers on one of Saturn's moons to measure the chemical makeup.

Wednesday's flyby will take Cassini within 30 miles of the surface of Enceladus at closest approach.

The unmanned probe will be about 120 miles above the moon as it sweeps through the edge of the geysers and measures their chemical makeup.

The carefully orchestrated event will take Cassini "deeper than we've been before," mission scientist Carolyn Porco of the Space Science Institute said in an e-mail.

Scientists long believed Enceladus, the shiniest object in the solar system, was cold and still because it resides hundreds of millions of miles from the sun. But recent evidence shows the Arizona-size satellite is geologically active, with a significant atmosphere and a relatively warm south pole.

In 2005, Cassini surprised scientists when it snapped images of geyser-like eruptions of ice particles and water vapor spewing from the south pole. The dramatic images effectively put Enceladus (en-SELL'-uh-duhs) on the short list of places within the solar system most likely to have conditions suitable for extraterrestrial life.

Scientists generally agree the presence of water, organic compounds and a stable heat source are needed to support primitive life.

Previous measurements by Cassini showed the eruptions were frequent, with gases and particles venting from the surface at about 800 mph and forming plumes hundreds of miles high.

The source of the geysers is a mystery, but some theorize reservoirs of liquid water below the surface are likely supplying the ice and vapor seen in the plumes.

Until now, scientists have not been able to measure the plumes' makeup in detail. Using its particle analyzers, Cassini will calculate the density, size and speed of the various gases and particles. The spacecraft's cameras will also image the moon during the flyby.

Of particular interest is whether the plumes contain ammonia, which can keep water in liquid form and would bolster the theory that liquid water lies beneath.

"There's not much for us ... to do regarding the upcoming flyby except to hold our breaths and cross our fingers," John Spencer of the Southwest Research Institute in Boulder, Colorado, wrote on the Cassini blog.

The close encounter poses little danger to Cassini because the plume particles are small compared with the dust-size debris the spacecraft is used to flying through while orbiting Saturn, scientists said.

The Cassini mission is a collaboration between NASA and the European and Italian space agencies.

Copyright 2008 The Associated Press. All rights reserved.This material may not be published, broadcast, rewritten, or redistributed.


Source from: edition.cnn.com

Messenger probe shows off side of Mercury never seen before

Sunday, February 17, 2008

art.mercury.spider.ap.jpg

WASHINGTON (AP) -- The first pictures from the unseen side of Mercury reveal the wrinkles of a shrinking, aging planet with scars from volcanic eruptions and a birthmark shaped like a spider.

A scientist thinks Mercury's "spider," found by NASA's Messenger probe, could be remnants of a volcano.

Some of the 1,213 photos taken by NASA's Messenger probe and unveiled Wednesday help support the case that ancient volcanoes dot Mercury and that it is shrinking as it gets older, forming wrinkle-like ridges. But other images are surprising and puzzling.

The spidery shape captured in a photo is "unlike anything we've seen anywhere in the solar system," said mission chief scientist Sean Solomon of the Carnegie Institution of Washington. The image shows what looks like a large crater with faint lines radiating out from it.

Mercury, the closest planet to the sun, has often been compared to Earth's dull black-and-white moon. But the new photos, which reveal parts of Mercury never seen, show the tiny planet is more colorful and once had volcanic activity.

With the help of NASA high-tech enhancement, Messenger photos showed baby blues and dark reds.

"It has very subtle red and blue areas," said instrument scientist Louise Prockter of Johns Hopkins University, which runs the Messenger mission for NASA. "Mercury doesn't look like the moon."

Mariner 10 was the last NASA spacecraft to visit Mercury. In 1975, it took pictures of just 45 percent of the planet.

Messenger, which will do a couple more flybys of the planet before going into a long-term orbit, already has taken pictures of another 30 percent of Mercury, Prockter said. The rest will be seen eventually.

Planetary scientist Robert Strom, who was part of both the Mariner 10 and Messenger teams, said, "This is a whole new planet we're looking at."

And Prockter noted "there are some features we haven't been able to explain yet."

Example No. 1 is what scientists are calling "the spider." It is in the middle of a basin formed billions of years ago when space junk bombarded an infant Mercury.

Mariner had seen only part of the crater. When Messenger took a look with sharper cameras and a better angle, it photographed the odd central plateau, jutting about half a mile high with dozens of tiny ridges radiating out.

It is as if "something is pushed up," said Maria Zuber, a Massachusetts Institute of Technology planetary scientist who is part of the science team.

Prockter guessed that it could be remnants of a volcano. Other scientists think the leg-like features could be the same ridges seen all over Mercury.

The planet's ridges, first seen in the 1970s, now seen to more widely provide evidence that Mercury is contracting, the scientists said.

Scientists had theorized that as the core of Mercury cools, it contracts, and the whole planet shrinks. That was even a 19th century theory for why Earth had mountains, but one that was later proved wrong, Solomon said. But with Mercury, that seems to be the case. As the planet shrinks, a bit of crust is pushed over another, forming what Prockter calls "wrinkle ridges."

Besides having what looks like the leftovers from volcanoes, Mercury has at least one crater that seems to be filled with what would be that planet's version of lava, Prockter said.

NASA launched the $446 million Messenger on its nearly 5 billion-mile mission in 2004. It will fly by Mercury two more times, this October and September 2009, before settling into orbit in 2011. Messenger will take pictures, and it will measure the planet's tenuous atmosphere, hills, valleys and unusual magnetic field. Mercury is the only planet in the solar system other than Earth to have a magnetosphere.

Quirky Mercury is one of the bigger question marks in the solar system, probed not nearly as much as Mars, Jupiter, Venus or Saturn.

Strom, a retired University of Arizona scientist who worked on Mariner 10, said that as he awaited Messenger's flyby earlier this month, "I couldn't sleep at all. I was like a kid on Christmas Eve."

Only he had to wait 30 years for his presents. It was worth it, he said: "What I saw was astounding to me."

Copyright 2008 The Associated Press. All rights reserved.This material may not be published, broadcast, rewritten, or redistributed.


Source from: edition.cnn.com

Messenger probe shows off side of Mercury never seen before

Sunday, February 10, 2008

art.mercury.spider.ap.jpg

WASHINGTON (AP) -- The first pictures from the unseen side of Mercury reveal the wrinkles of a shrinking, aging planet with scars from volcanic eruptions and a birthmark shaped like a spider.

A scientist thinks Mercury's "spider," found by NASA's Messenger probe, could be remnants of a volcano.

Some of the 1,213 photos taken by NASA's Messenger probe and unveiled Wednesday help support the case that ancient volcanoes dot Mercury and that it is shrinking as it gets older, forming wrinkle-like ridges. But other images are surprising and puzzling.

The spidery shape captured in a photo is "unlike anything we've seen anywhere in the solar system," said mission chief scientist Sean Solomon of the Carnegie Institution of Washington. The image shows what looks like a large crater with faint lines radiating out from it.

Mercury, the closest planet to the sun, has often been compared to Earth's dull black-and-white moon. But the new photos, which reveal parts of Mercury never seen, show the tiny planet is more colorful and once had volcanic activity.

With the help of NASA high-tech enhancement, Messenger photos showed baby blues and dark reds.

"It has very subtle red and blue areas," said instrument scientist Louise Prockter of Johns Hopkins University, which runs the Messenger mission for NASA. "Mercury doesn't look like the moon."

Mariner 10 was the last NASA spacecraft to visit Mercury. In 1975, it took pictures of just 45 percent of the planet.

Messenger, which will do a couple more flybys of the planet before going into a long-term orbit, already has taken pictures of another 30 percent of Mercury, Prockter said. The rest will be seen eventually.

Planetary scientist Robert Strom, who was part of both the Mariner 10 and Messenger teams, said, "This is a whole new planet we're looking at."

And Prockter noted "there are some features we haven't been able to explain yet."

Example No. 1 is what scientists are calling "the spider." It is in the middle of a basin formed billions of years ago when space junk bombarded an infant Mercury.

Mariner had seen only part of the crater. When Messenger took a look with sharper cameras and a better angle, it photographed the odd central plateau, jutting about half a mile high with dozens of tiny ridges radiating out.

It is as if "something is pushed up," said Maria Zuber, a Massachusetts Institute of Technology planetary scientist who is part of the science team.

Prockter guessed that it could be remnants of a volcano. Other scientists think the leg-like features could be the same ridges seen all over Mercury.

The planet's ridges, first seen in the 1970s, now seen to more widely provide evidence that Mercury is contracting, the scientists said.

Scientists had theorized that as the core of Mercury cools, it contracts, and the whole planet shrinks. That was even a 19th century theory for why Earth had mountains, but one that was later proved wrong, Solomon said. But with Mercury, that seems to be the case. As the planet shrinks, a bit of crust is pushed over another, forming what Prockter calls "wrinkle ridges."

Besides having what looks like the leftovers from volcanoes, Mercury has at least one crater that seems to be filled with what would be that planet's version of lava, Prockter said.

NASA launched the $446 million Messenger on its nearly 5 billion-mile mission in 2004. It will fly by Mercury two more times, this October and September 2009, before settling into orbit in 2011. Messenger will take pictures, and it will measure the planet's tenuous atmosphere, hills, valleys and unusual magnetic field. Mercury is the only planet in the solar system other than Earth to have a magnetosphere.

Quirky Mercury is one of the bigger question marks in the solar system, probed not nearly as much as Mars, Jupiter, Venus or Saturn.

Strom, a retired University of Arizona scientist who worked on Mariner 10, said that as he awaited Messenger's flyby earlier this month, "I couldn't sleep at all. I was like a kid on Christmas Eve."

Only he had to wait 30 years for his presents. It was worth it, he said: "What I saw was astounding to me."

Copyright 2008 The Associated Press. All rights reserved.This material may not be published, broadcast, rewritten, or redistributed.


Source from: edition.cnn.com

Astronomers vie to make biggest telescope

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WASHINGTON (AP) -- A telescope arms race is taking shape around the world. Astronomers are drawing up plans for the biggest, most powerful instruments ever constructed, capable of peering far deeper into the universe -- and further back in time -- than ever before.

This picture provided by David S. Steele shows the Large Binocular Telescope Observatory near Safford, Arizona.

The building boom, which is expected to play out over the next decade and cost billions of dollars, is being driven by technological advances that afford unprecedented clarity and magnification. Some scientists say it will be much like switching from regular TV to high-definition.

In fact, the super-sized telescopes will yield even finer pictures than the Hubble Space Telescope, which was put in orbit in 1990 and was long considered superior because its view was freed from the distorting effects of Earth's atmosphere. But now, land-based telescopes can correct for such distortion.

Just the names of many of the proposed observatories suggest an arms race: the Giant Magellan Telescope, the Thirty Meter Telescope and the European Extremely Large Telescope, which was downsized from the OverWhelmingly Large Telescope. Add to those three big ground observatories a new super eye in the sky, NASA's James Webb Space Telescope, scheduled for launch in 2013.

With these proposed giant telescopes, astronomers hope to get the first pictures of planets outside our solar system, watch stars and planets being born, and catch a glimpse of what was happening near the birth of the universe.

"We know almost nothing about the universe in its early stages," said Carnegie Observatories director Wendy Freedman, who chairs the board that is building the Giant Magellan Telescope. "The GMT is going to see in action the first stars, the first galaxies, the first supernovae, the first black holes to form."

When scientists look at a faraway celestial object, they are seeing it as it existed millions and millions of years ago, because it takes so long for light from the object to reach Earth.

Current telescopes are able to look back only about 1 billion years in time. But the new telescopes will be so powerful that they should be able to gaze back to a couple of hundred million years after the Big Bang, which scientists believe happened 13.7 billion years ago. That's where all the action is.

"We hope to answer these questions: Are we alone in the universe? What is the nature of dark matter and dark energy in the universe?" said astronomer Henri Boffin, outreach scientist for the European Southern Observatory.

An 80-foot mirror

Two new technologies enable this extraordinary quest -- one reliant on modern lasers and computing power and the other inspired by ancient Greek and Roman tilework.

The first is adaptive optics. It allows telescopes on the ground to get rid of the distortion caused when looking through Earth's thick atmosphere into space.

Adaptive optics relies on a laser to create an artificial star, or a constellation of fake stars, in the sky. Astronomers then examine the fake stars and use computers to calculate how much atmospheric distortion there is at any given time. Then they adjust the mirrors to compensate like a pair of eyeglasses. This adjustment happens automatically hundreds of times per second.

Adaptive optics worked first for smaller telescopes. But getting it to work for big observatories was a problem. The first successful use in large telescopes was in 2003 at the twin-telescope Keck Observatory in Hawaii, an effort that took nine years.

The second breakthrough involves technology that makes bigger mirrors possible. Instead of casting a giant mirror in one piece, which is difficult and limits size, astronomers now make smaller mirror segments and piece them together.

Keck scientist Jerry Nelson, now working on the Thirty Meter Telescope, pioneered this technique and said he got the idea from looking at how the Greeks and Romans tiled their baths. This technique is going from 36 segments in current telescopes to 492 segments with his new project.

In astronomy, the bigger the mirror, the greater the amount of light that can be grabbed from the universe. For the past decade and a half, the Keck has had the largest Earth-bound telescopes, with mirrors nearly 33 feet in diameter.

However, three giant land observatories, proposed for construction within the decade, are going to dwarf those:

  • The Giant Magellan Telescope. A partnership of six U.S. universities, an Australian college, the Smithsonian Astrophysical Observatory and the Carnegie Institution of Washington will place the telescope in Las Campanas, Chile, around 2016. The plan is for an 80-foot mirror. The cost is around $500 million.
  • The Thirty Meter Telescope. The California Institute of Technology, the University of California and the Association of Canadian Universities for Research in Astronomy are aiming for a telescope with about a 98-foot mirror by 2018. No site has been chosen. The cost is about $780 million.
  • The European Extremely Large Telescope. A partnership of European countries called the European Southern Observatory already has telescopes in Chile and is aiming for a new one with a mirror of 138 feet, scaled back from initial plans of 328 feet. The Europeans are aiming for a 2018 completion, but have not chosen a specific location yet. The cost would be $1.17 billion.
  • Hubble's so 5-minutes ago

    The managers of these projects are fairly confident they will get the money they need to complete their grand visions. However, some astronomers worry that there may not be enough private or government money for all of them, so they find themselves competing for funding, even as they cheer each other on.

    If completed, ESO's European Extremely Large Telescope would be the biggest of the new observatories and should be able to see 20 to 100 times more sharply than the current best land-based telescopes. The Hubble, which set the standard for stunning astronomical pictures, will seem less amazing.

    "Oh, you ain't seen nothing yet," said 2006 Nobel Prize-winning physicist John Mather, senior project scientist for NASA's James Webb Space Telescope.

    The $4.5 billion Webb Telescope, designed to travel 900,000 miles beyond Earth's orbit, is not faced with the atmospheric distortion of ground telescopes. Still, it will use its own version of adaptive optics. Because of temperature fluctuations in the cold of space, the telescope will have to adjust the shape of its mirrors automatically. Webb's mirror, which is 21/2 times bigger than Hubble's, has 18 segments.

    While places like Arizona and Hawaii have been successful sites for high-quality space images, Chile is the focal point of the next-generation building boom.

    Both the Thirty Meter and European telescope are looking at several sites there although the Thirty Meter team is also considering Baja Mexico and Hawaii. What's needed is the right combination of atmospheric conditions, weather, high altitude, prevailing winds and dark skies.

    But there is more in the works than just the super-sized scopes. Smaller, more specialized telescopes are in various stages of design and construction.

    The $400 million Large Synoptic Survey Telescope to be built in Chile by 2014 would survey the sky, constantly shooting a movie of 20 billion objects in the cosmos and spotting targets for bigger telescopes.

    A planned project in Hawaii would be on the lookout for "killer asteroids." And in Chile, dozens of high-precision antennas are being erected for a huge radio astronomy observatory, called ALMA, that would look into the universe in a different way.

    It is the biggest observatories in the works, however, that will provide the dramatic change in astronomical pictures. The pictures to come, Nelson said of the Thirty Meter project, will "knock your socks off, faint stuff that Hubble can't see."

    Copyright 2008 The Associated Press. All rights reserved.This material may not be published, broadcast, rewritten, or redistributed.


    Source from: edition.cnn.com

    Is she or isn't she? Mummy lab working to ID pharaoh queen

    Sunday, January 13, 2008

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    CAIRO, Egypt (AP) -- Months after Egypt boldly announced that archaeologists had identified a mummy as the most powerful queen of her time, scientists in a museum basement are still analyzing DNA from the bald, 3,500-year-old corpse to try to back up the claim aired on TV.

    DNA testing continues on these mummified remains thought to be Queen Hatshepsut.

    Progress is slow. So far, results indicate the linen-wrapped mummy is most likely, but not conclusively, the female pharaoh Queen Hatshepsut, who ruled for 20 years in the 15th century B.C.

    Running its own ancient-DNA lab is a major step forward for Egypt, which for decades has seen foreigners take most of the credit for major discoveries here.

    It's time Egyptian scientists took charge, said Zahi Hawass, Egypt's antiquities chief who spearheaded the quest to find Hatshepsut and build the lab. "Egyptology, for the last 200 years, it has been led by foreigners."

    But the Hatshepsut discovery also highlights the struggle to back up recent spectacular findings in Egypt, including the unearthing of ancient tombs and mummies, investigations into how King Tut died, and even the discovery in the Siwa oasis of possibly the world's oldest human footprint.

    So far, the science shown in the Discovery Channel's "Secrets of Egypt's Lost Queen" has not been published in a reputable peer-reviewed scientific journal -- the gold standard of scientific research worldwide.

    And some scientists, even ones working on the project, have raised concerns.

    "I think the people at the Discovery Channel went way too much 'CSI,"' said biological anthropologist Angelique Corthals, referring to television's "Crime Scene Investigation" series.

    "They think you can pick up evidence at 2 p.m. and by 6 p.m. you get results," added Corthals, a scholar at England's University of Manchester who has been helping Egypt establish the DNA lab.

    In June Egypt announced that Hatshepsut's mummy had been found, and about a month later the Discovery Channel aired the documentary -- showcasing scientific breakthroughs including CT scans and DNA testing. The mummy is now on display in a glass case in the Egyptian Museum's royal mummy room.

    Hawass, other Egyptian officials and the Discovery Channel all stand by their findings, even though the DNA testing is incomplete.

    "So far there is some agreement and no discrepancies. The results are quite encouraging," said Yehia Zakaria Gad, a molecular geneticist who heads the ancient-DNA lab at the Egyptian Museum.

    Most of evidence that led Hawass to declare the mummy to be Hatshepsut did not come from DNA but from CT scans. Those scans showed that a tooth found in a relic box displaying the pharaoh's insignia matched a gap in the mummy's jaw.

    CT scans also showed facial similarities between the mummy and already identified mummies of Hatshepsut's royal relatives, as well as evidence of a skin disease that the queen may have shared with some of them.

    "The reason why we went with such a strong claim was because the CT scan was conclusive and the fact that the missing tooth provided the missing clue. ... I don't think that the DNA testing will indicate otherwise," said Peter Lovering, Discovery's senior programming executive.

    Now, scientists at the Egyptian Museum lab are comparing Hatshepsut's DNA sequences to the previously identified mummy of Hatshepsut's grandmother -- the first such attempt in Egypt at using this scientific analysis to verify a mummy's identity. DNA is the unique genetic code of a person and a key tool in solving decades-old crimes, establishing paternity and finding cures for diseases.

    The Discovery documentary, which showed scientists extracting the DNA from the mummies, did indicate the DNA results were incomplete and did not say those results proved the mummy was Hatshepsut.

    But Corthals still has raised concerns about the expectations placed on the new DNA lab.

    She said the team at the Egyptian lab was under "a lot of pressure" to produce results. She said they had "very good preliminary results," but that it will still take months to verify that those results were not a fluke.

    Egypt also lacks an independent second lab to review the testing. Before any DNA results can be published in a scientific journal, the Egyptian Museum lab must duplicate its initial findings -- which have not yet been completed -- and then the samples must be sent to an independent lab to be replicated.

    "The ancient-DNA world goes by a very stringent set of criteria. ... One of the biggest is replication by an independent lab," Corthals said. "If you don't do it, particularly with something so famous as this mummy, no peer review journal will publish it.

    "And if you don't get it published in a peer review journal, as a scientist, you haven't done anything," she said.

    Hawass says he is trying to get a second DNA lab set up in Egypt. The first $5 million lab, funded by the Discovery Channel, is the centerpiece of an ambitious plan to identify mummies and re-examine the royal mummy collection.

    The process is time-consuming, especially for a new lab with scientists who have little experience with mummy DNA. It takes three days just to extract the delicate DNA; then scientists must spend at least three more days completing one test on one sample. Months are needed to make a finding.

    During a recent tour of the lab by an Associated Press reporter, Gad was not firm on how much more time is needed to complete initial tests on Hatshepsut, saying only that he was "nearly there."

    The Discovery Channel paid for the current lab in exchange for exclusive rights to film the search for the Hatshepsut mummy. Hawass said he's offering other companies a similar deal: the rights to film a highly coveted expedition -- possibly the search for King Tut's family -- in exchange for a second lab.

    "This is how I use TVs to bring technology here," he said during an interview in his Cairo office. He added that he has had nibbles about a deal, but would not elaborate.

    Hawass has ambitious plans for DNA testing in Egypt, including examining all the royal mummies and the nearly two dozen unidentified mummies stored in the Egyptian Museum. He believes DNA tests will show that some royal mummies on display are not who archaeologists thought they were.

    One example is the mummy of Thutmose I, Hatshepsut's father, found in the late 19th century amid the ancient sites in Luxor. But further investigation discovered that the mummy was too young to be Thutmose I, who died in his 50s, Hawass said.

    "I really do believe that the Egyptian mummy project is going to be very important in revealing lots of secrets," he said.

    But not everyone is convinced.

    A mummy's age, the mummification process and the condition in which it was stored all contribute to a high degree of contamination and results that are not foolproof, said Salima Ikram, a professor of Egyptology at the American University in Cairo.

    "It is exciting and it can be useful. But please, use it with a little bit of caution," she said.

    Copyright 2007 The Associated Press. All rights reserved.This material may not be published, broadcast, rewritten, or redistributed.


    Source from: edition.cnn.com

    Scientists make videos for the Web

    Monday, December 10, 2007

    art.bourne.ap.jpg

    LOS ANGELES, California (AP) -- Haim Weizman is a chemist by trade and an Internet moviemaker on the side.

    Dr. Phillip Bourne created video-sharing site SciVee.com.

    In his first video, a telegenic narrator in a lab coat swirls a flask as electronic music plays in the background. Created by four science and film students at the University of California, San Diego, the video shows a typical recrystallization experiment straight out of Chemistry 101.

    The six-minute epic complete with bloopers got 1,205 views on Google Inc.'s YouTube. But the number increased fourfold when the video was posted to SciVee, one of a number of online video-sharing startups designed to let scientists broadcast themselves toiling in the laboratory or delivering lectures.

    Fans of the niche sites say they help the lay public -- and students -- understand the scientific process, allow researchers to duplicate one another's results and may help discourage fraud.

    "Anyone in an organic chemistry class anywhere can now perform this experiment by watching the video. There are so many details that it's hard to describe in a lab manual," said Weizman, a lecturer at UC San Diego. He went on to produce five more lab-training videos.

    Researchers who are uploading their experiments and lectures online are discovering filmmaking is more art than science. If the narrators are boring or the image is shaky, viewers will quickly learn to click elsewhere.

    "Scientists are not moviemakers, so getting them to shoot their experiments and describe them properly can be a challenge," said Anton Denissov, a broadband video analyst with the Yankee Group.

    Funded by the National Science Foundation, SciVee encourages scholars with a paper hot off the press to make a short video called a "pubcast" highlighting the key points. It also accepts unsolicited submissions that have no connection to any published work.

    Phil Bourne, a pharmacologist at UC San Diego, launched SciVee this summer after seeing his students hooked on YouTube. Bourne wanted a reputable virtual place where researchers could trade techniques without the potpourri of topics found on general video-sharing sites.

    "It's quite a quantum leap for scientists to present their research in this way," Bourne said.

    The age-old practice of reporting scientific results in peer-reviewed journals or at scientific conferences isn't going away soon. Most journals with online editions are taking a wait-and-see approach about YouTube-type videos, although many routinely add podcasts and other media to accompany papers.

    "This is an area we're extremely interested in, but we're still in the embryonic stage," said Stewart Wills, online editor of the journal Science.

    One of the startup sites -- called JoVE, short for the Journal of Visualized Experiments -- is the digital mirror to traditional scientific journals, however.

    Created last year by a former Harvard postdoctoral student with help from an angel investor, the site has stringent publication rules. On the recommendation of its editorial panel, it dispatches professional videographers to labs around the world doing interesting work. Their footage is edited and approved by the researchers before being posted.

    JoVE editor-in-chief Moshe Pritsker said the Web site grew out of "personal pain." For most of his academic career, he was flustered by what he called the "black hole" of science. Despite attempts by well-intentioned scientists to explain their experiments on paper, some procedures are so complex to mimic, a person must physically explain them.

    Pritsker said he once flew to Scotland for a week when he was a Ph.D student just to see how a research group performed an embryonic stem cell technique. He couldn't help but wonder if there were an easier way than jetting across the Atlantic Ocean to reproduce a two-hour procedure.

    "We need to show our experiments, and 'show' in our age means video," Pritsker said.

    The popularity of JoVe inspired Siddharth Singh, a computer science graduate student in India, to start a site in March called LabAction, which focuses on sharing biological techniques. Another site, called DnaTube, was launched in January by Nazir Okur, a molecular genetics graduate student at the University of Illinois who encourages scientists to upload videos of their studies, lectures and seminars.

    Some experts say the biggest advantage to science videos is making research more accessible to nonscientists. There's no guarantee that video can't be manipulated, but the medium also may force scientists to think twice before committing fraud.

    "It's one thing to put your name on a fake paper and it's another to make a fake video that your friends and family could watch," said John B. Horrigan, associate director for research at the Pew Internet & American Life Project.

    Last year, Horrigan authored a study that found more than half the people who seek science information online want to hear it from the original source.

    Translating the experiments to video won't be without challenges. Chief among them is attracting enough Web traffic to make the sites profitable. Even combined, the science video sites attract an extremely small group compared with the hoards who flock to YouTube, which drew 48.5 million unique U.S. visitors in October, according to comScore Inc.

    Weizman, the UC San Diego chemist, approaches each video he makes through the eyes of his students. For his inaugural project, he knew he wanted music in the background and a script that clearly explained every step of the experiment.

    "I have a little picture in my mind of what I want to see," he said. "That makes a huge difference."

    Copyright 2007 The Associated Press. All rights reserved.This material may not be published, broadcast, rewritten, or redistributed.


    Source from: edition.cnn.com

    Scientists make videos for the Web

    Monday, December 3, 2007

    art.bourne.ap.jpg

    LOS ANGELES, California (AP) -- Haim Weizman is a chemist by trade and an Internet moviemaker on the side.

    Dr. Phillip Bourne created video-sharing site SciVee.com.

    In his first video, a telegenic narrator in a lab coat swirls a flask as electronic music plays in the background. Created by four science and film students at the University of California, San Diego, the video shows a typical recrystallization experiment straight out of Chemistry 101.

    The six-minute epic complete with bloopers got 1,205 views on Google Inc.'s YouTube. But the number increased fourfold when the video was posted to SciVee, one of a number of online video-sharing startups designed to let scientists broadcast themselves toiling in the laboratory or delivering lectures.

    Fans of the niche sites say they help the lay public -- and students -- understand the scientific process, allow researchers to duplicate one another's results and may help discourage fraud.

    "Anyone in an organic chemistry class anywhere can now perform this experiment by watching the video. There are so many details that it's hard to describe in a lab manual," said Weizman, a lecturer at UC San Diego. He went on to produce five more lab-training videos.

    Researchers who are uploading their experiments and lectures online are discovering filmmaking is more art than science. If the narrators are boring or the image is shaky, viewers will quickly learn to click elsewhere.

    "Scientists are not moviemakers, so getting them to shoot their experiments and describe them properly can be a challenge," said Anton Denissov, a broadband video analyst with the Yankee Group.

    Funded by the National Science Foundation, SciVee encourages scholars with a paper hot off the press to make a short video called a "pubcast" highlighting the key points. It also accepts unsolicited submissions that have no connection to any published work.

    Phil Bourne, a pharmacologist at UC San Diego, launched SciVee this summer after seeing his students hooked on YouTube. Bourne wanted a reputable virtual place where researchers could trade techniques without the potpourri of topics found on general video-sharing sites.

    "It's quite a quantum leap for scientists to present their research in this way," Bourne said.

    The age-old practice of reporting scientific results in peer-reviewed journals or at scientific conferences isn't going away soon. Most journals with online editions are taking a wait-and-see approach about YouTube-type videos, although many routinely add podcasts and other media to accompany papers.

    "This is an area we're extremely interested in, but we're still in the embryonic stage," said Stewart Wills, online editor of the journal Science.

    One of the startup sites -- called JoVE, short for the Journal of Visualized Experiments -- is the digital mirror to traditional scientific journals, however.

    Created last year by a former Harvard postdoctoral student with help from an angel investor, the site has stringent publication rules. On the recommendation of its editorial panel, it dispatches professional videographers to labs around the world doing interesting work. Their footage is edited and approved by the researchers before being posted.

    JoVE editor-in-chief Moshe Pritsker said the Web site grew out of "personal pain." For most of his academic career, he was flustered by what he called the "black hole" of science. Despite attempts by well-intentioned scientists to explain their experiments on paper, some procedures are so complex to mimic, a person must physically explain them.

    Pritsker said he once flew to Scotland for a week when he was a Ph.D student just to see how a research group performed an embryonic stem cell technique. He couldn't help but wonder if there were an easier way than jetting across the Atlantic Ocean to reproduce a two-hour procedure.

    "We need to show our experiments, and 'show' in our age means video," Pritsker said.

    The popularity of JoVe inspired Siddharth Singh, a computer science graduate student in India, to start a site in March called LabAction, which focuses on sharing biological techniques. Another site, called DnaTube, was launched in January by Nazir Okur, a molecular genetics graduate student at the University of Illinois who encourages scientists to upload videos of their studies, lectures and seminars.

    Some experts say the biggest advantage to science videos is making research more accessible to nonscientists. There's no guarantee that video can't be manipulated, but the medium also may force scientists to think twice before committing fraud.

    "It's one thing to put your name on a fake paper and it's another to make a fake video that your friends and family could watch," said John B. Horrigan, associate director for research at the Pew Internet & American Life Project.

    Last year, Horrigan authored a study that found more than half the people who seek science information online want to hear it from the original source.

    Translating the experiments to video won't be without challenges. Chief among them is attracting enough Web traffic to make the sites profitable. Even combined, the science video sites attract an extremely small group compared with the hoards who flock to YouTube, which drew 48.5 million unique U.S. visitors in October, according to comScore Inc.

    Weizman, the UC San Diego chemist, approaches each video he makes through the eyes of his students. For his inaugural project, he knew he wanted music in the background and a script that clearly explained every step of the experiment.

    "I have a little picture in my mind of what I want to see," he said. "That makes a huge difference."

    Copyright 2007 The Associated Press. All rights reserved.This material may not be published, broadcast, rewritten, or redistributed.


    Source from: edition.cnn.com

    Graphics chips rev up research results

    Saturday, December 1, 2007

    Screenshot from The Witcher, Atari UK
    A better graphics card means PC games look more realistic

    Every serious PC gamer knows what a difference a good graphics card can make to the fun they have.

    But it is not just hardcore gamers who have recognised the worth of a PC graphics card.

    Increasing numbers of research scientists have woken up to their potential too.

    But the scientists in question are not using the cards to appreciate the detail in PC games such as The Witcher. Instead they are using them as cheap sources of supercomputer-class processing power.

    "They give a phenomenal bang for the buck," said Mike Giles, professor of scientific computing at the University of Oxford.

    Prof Giles said the way that graphics cards were built made them very good at the repetitive computational tasks many scientists use to test theories, models and predictions.

    Spot checks

    Professor Susan Hagness from the Department of Electrical and Computer Engineering at the University of Wisconsin-Madison has turned to graphics cards to quickly analyse breast scans to spot cancer in its early stages.

    Dr Hagness said official figures suggest x-rays missed 20% of the cancers that were present when a woman underwent screening.

    Mammography scan, SPL
    Women want scan results as quickly as possible

    Dr Hagness' team is using microwaves to scan tissue and then pumping the results through hardware made by Canadian firm Acceleware which bolts together several graphics cards into a mini computational cluster.

    The dedicated hardware meant that results emerged in a matter of hours rather than days, said Dr Hagness.

    This was essential when the technique began to be used in a clinical setting, she said.

    "Any woman who undergoes screening mammography wants the results straight away."

    Hardware helper

    Prof Giles, who is using graphics processors to do financial modelling, said the chips were very good at doing the same thing many different times.

    By contrast the Intel or AMD chips inside a typical desktop machine were good at doing many different things at the same time.

    Graphics cards had far more processing cores - which execute program instructions - than Intel or AMD chips, said Prof Giles, adding that each one of the cores could do one run of the same simple task.

    The financial models that Prof Giles is running test the same algorithm on each core but each one gets different random numbers as input.

    With the latest graphics processors having more than 100 processing cores that can add up to a lot of number crunching.

    Broker on phone, AP
    Modelling financial markets helps firms weather stock movements

    "Each core is logically very simple but its floating point capability is the same as an Intel chip," said Prof Giles.

    Developments in methods of writing code to handle the processing was also making graphics processors much more attractive, he said.

    "In the early days you could only use graphics cards for graphics," said Prof Giles.

    In particular, he said, graphics card maker Nvidia had released software tools called Cuda (Compute Unified Device Architecture) that made it much easier to write code.

    "For a while there were only hard-to-use shader languages," said Prof Giles, "Cuda is a much more usable development environment."

    Flow control

    By harnessing that processing power many scientists are getting results from simulations far faster than before.

    PhD student Tobias Brandvik and Dr Graham Pullan in the Whittle Laboratory at the University of Cambridge engineering department had sped up simulations of turbine blade designs by 40 times by using a few graphics cards.

    Each blade, said Dr Pullan, was custom designed for the jet or power plant in which they will be used.

    Rolls Royce Trent jet engine, PA
    Tiny improvements in efficiency have big rewards in turbine engines

    But, he said, even with this formidable level of complexity the design process models the turbulent air rather than accurately representing or resolving it.

    "With a cluster of graphical processing units, we could hope to use, say, 10 million cells," he said. The simulation run would take the same amount of time as existing models.

    "Then, we would resolve some of the larger turbulent eddies," said Dr Pullan. "In general, the more we resolve and the less we model, the more accurate the theory."

    An alternative would be to stick with 500,000 cells and try lots more blade designs or include blades upstream and downstream to get a better overall picture of air flowing through a turbine.

    Tiny improvements in design can have a huge payoff, said Dr Pullan.

    "It's all about making the absolute best efficiency possible," he said.

    "Improvements of even 1% in fuel consumption, for jet engines, or 1% in electricity power generated, for steam or gas turbines for power generation, is highly sought after."Damming concern Science icon Bitter memories

    Source from: news.bbc.co.uk

    Topical waters

    Thursday, November 29, 2007

    art.plankton.gi.jpg

    LONDON, England (CNN) -- Research published last month paints an increasingly gloomy picture of the accelerating rate of climate change, raising genuine fears that efforts to combat carbon emissions may already be too late to restrict seismic changes in the earth's temperatures.

    Plankton bloom off the coast of Norway as seen from the ESA satellite Envisat on 10 June 2006.

    Compiled by a group of eminent scientists and published in the U.S. journal 'Proceedings of the National Academy of Sciences (PNAS)the report suggests that greenhouse gases are rising at a faster rate now than they did in the 1990's.

    The scientists cite three main causes for this alarming rise; Growth in the world economy, increased fossil fuel emissions since 2000 and a decline in the efficiency of the ocean and land 'sinks' to absorb carbon emissions.

    In the wake of this troubling new data about ocean carbon absorption, a range of geo-engineering solutions are being hotly debated in the scientific community and piloted by eco-businesses. The hope is that by intervening in the ocean's eco-system we will be able to reverse or stabilize the rates of growth in global warming.

    The oceans are natural 'CO2 sinks' (a reservoir that absorbs atmospheric carbon). Phytoplankton -- microscopic organisms that congregate near the ocean surface - absorb atmospheric CO2 through photosynthesis. At the end of their lifetime -- usually only a few days -- they fall to the ocean floor carrying with them the CO2.

    Scientists have known for some time that large swathes of the earth's oceans harbor extremely low densities of phytoplankton. These areas are known as HNLC (high-nutrient, low-chlorophyll) zones and are thought to be caused by a scarcity of iron.

    This iron-deficiency theory was first postulated in the 1930's by English scientist Joseph Hart.

    But it wasn't until the 1980's that the American oceanographer John Martin measured the iron content of the seawater in HNLC zones and found negligible amounts.

    He argued that the sea gets it iron from dust swept into the sea from the land, and that wind currents weren't carrying iron to HNLC areas. Martin tested his hypothesis in Antarctica and found that phytoplankton thrived in jars of seawater infused with iron.

    Martin's discoveries set in motion further research in this area and it was in the spirit of his work that a ship named Weatherbird II set sail for the tropical waters of the eastern Atlantic earlier this month.

    Its mission is to carry out Martin's experiment on a much grander scale, pouring iron ore into the ocean in an attempt to stimulate plankton growth and assess the wider effects on sea life.

    The pilot study has been organized by Planktos, a Californian-based eco-restoration company.

    "This really might be an incredible solution," Planktos CEO Russ George told CNN.

    "In climate change we talk about a tipping point, but in oceans and ocean life we are far over that tipping point," he said.

    George has been involved in the carbon credit business for over 30 years. He started a tree planting company in British Columbia and estimates that he has planted over a quarter of a billion trees in Canada alone. A subsidiary company, KlimaFa Ltd is currently restoring forests in the European Union with over 100,000 hectares of land in Hungary being replenished.

    It was when the Kyoto accord was first signed in 1997 that George started thinking of new ways to sell carbon credits and started researching iron fertilization. He is confident that it will be a success.

    "20 years and 100-200 million dollars of public funds have identified this iron tonic solution as a way to restore the productivity of the ocean," he said.

    Yet Planktos is a constant target for groups who don't buy into the idea of carbon offsets.

    In a joint statement in August 2006 Greenpeace, the WWF and Friends of the Earth said: "Carbon offsets should only be seen as a last resort" and that "purchasing offsets can be seen as an easy way out for governments, businesses and individuals to continue polluting without making changes to the way they do business or their behavior".

    George has had to put up with protesters continually claiming that the technology that Planktos is trialing isn't regulated.

    "Any new technology in climate change that produces offsets has to go through a multi-tiered independent third party, transparent certification process. It's the most rigorous regulatory process on earth for any new technology," said George.

    But opponents remain unconvinced. The Sea Shepherd Conservation Society, a vocal critic of Planktos, has, according to George, threatened to 'intercept' the Weatherbird II if attempts are made to carry out research.

    George believes that the technology is the world's best hope. "We've lost 17 percent of all plant life in the Atlantic, 26 percent in the North Pacific and in the sub-tropical oceans 50 percent or more of plant life has disappeared," he said.

    The pilot study is scheduled to last several months and the results will be keenly monitored by scientists.

    CNN spoke to Professor Jef Huisman from the Institute for Biodiversity and Ecosystem Dynamics in the Netherlands about iron fertilization.

    "It is often discussed among scientists and we have mixed feelings about it," he said. "We know it could potentially reduce the levels of CO2 in the atmosphere, but we don't know what the consequences are."

    Asked about the research about to be conducted by Planktos, Professor Huisman said: I think it's an interesting idea as well as a dangerous idea. Interesting because we know that if we can increase the primary production and there will be a larger intake of carbon dioxide in to the ocean.

    "But is also dangerous. Just as you fertilize on land you will change the eco-system. Whereas we have experience of what happens in a meadow, we have no experience of what would happen with the eco-system species composition in the ocean. What happens if you do large scale iron fertilization? We have no idea which species are going to profit or whether it will cause harmful algal blooms.

    Professor Huisman predicts that once the iron goes into the ocean that there will be a strong increase in phytoplankton species.

    "I would expect the small phytoplankton species -- that have a fast growth rate - will be there first," he said. "Secondly you would have slow plankton species that would catch up and start grazing on the phytoplankton species."

    Huisman, an expert in aquatic microbiology, is currently researching the phenomenon of the deep chlorophyll maximum -- a layer of phytoplankton found in tropical and sub-tropical oceans. He thinks that iron fertilization studies should be done in water tanks before heading out to sea.

    "You could put an entire community from the pacific ocean in a 50 meter tank. There you could have a controlled experiment and the iron will not be eroded by ocean currents," he said.

    Despite constant haranguing from eco-protesters, Planktos' Russ George remains defiant and somewhat evangelical about the potential of "iron-seeding".

    "We are all here at the behest of the green plants in the ocean," he said. "4 percent of the planet is covered in rainforest. 72 percent of the planet is ocean. In the last five years we've lost all the rainforests worth of ocean plant life."

    If the pilot study is successful, George envisages container ships "re-booting" the oceans back to levels they where at 30 years ago. "It is the single great hope we have," he said.

    According to two eminent British environmental thinkers, increasing the uptake of CO2 by the oceans could be effected by vast vertical pipes beneath the surface of the ocean.

    Writing in the journal Nature, James Lovelock, creator of the Gaia hypothesis and Chris Rapley head of London's Science Museum argue that pumping nutrient-rich water from the depths of the oceans up to the sea's surface would allow the ocean to absorb more CO2.

    The idea is to have literally millions of pipes -- 100 meters long and 3 meters wide -- reaching down to the depths of the ocean. They could, the inventors suggest, sequester a sizable chunk of annual human carbon emissions.

    Professor Huisman isn't so sure that the plan would work though. "Concentrations of CO2 are higher in the deeper oceans," he said. "The major effect would be that carbon dioxide levels deep in the ocean would be brought to the surface. It is the opposite of what you would want."

    But he remains positive about utilizing the oceans. "If you could increase the uptake of the oceans it would really help with the greenhouse effect."


    Source from: edition.cnn.com

    Loss of Andes glaciers threatens water supply

    EL ALTO, Bolivia (AP) -- Twice a day, Elena Quispe draws water from a spigot on the dusty fringe of this city, fills three grimy plastic containers and pushes them in a rickety wheelbarrow to the adobe home she shares with her husband and eight children.

    But the water supply is in peril. El Alto and its sister city of La Paz, the world's highest capital, depend on glaciers for at least a third of their water -- more than any other urban sprawl. And those glaciers are rapidly melting because of global warming.

    Informed of the threat, Quispe, a 37-year-old Aymara Indian, shows alarm on her weathered face. "Where are we going to get water? Without water how can we live?"

    Scientists predict that all the glaciers in the tropical Andes will disappear by mid-century. The implications are dire not just for La Paz-El Alto but also for Quito, Ecuador, and Bogota, Colombia. More than 11 million people now live in the burgeoning cities, and El Alto alone is expanding at 5 percent a year.

    The melting of the glaciers threatens not just drinking water but also crops and the hydroelectric plants on which these cities rely. The affected countries will need hundreds of millions of dollars to build reservoirs, shore up leaky distribution networks and construct gas or oil-fired plants -- money they simply don't have.

    "We're the ones who've contributed the least to global warming and we're getting hit with the biggest bill," laments Edson Ramirez, a Bolivian hydrologist who coordinates U.N., French- and Japanese-sponsored projects to quantify the damage exacted on fragile Andes ecosystems by richer nations that use more gas and create more pollution.

    Bolivia, South America's poorest country, is responsible for just 0.03 percent of the world's carbon dioxide emissions that scientists blame for global warming, says Ramirez. The United States, by contrast, contributes about one quarter.

    President Evo Morales, in an Associated Press interview earlier this month, said he'll seek legal remedies if rich countries don't agree to pay for the damage they've wreaked on the developing world:

    "It's not a question of cooperation. It's an obligation," he said.

    U.N. Secretary-General Ban Ki-moon is urging that a new global treaty on climate change provide funding to help poor countries adapt to its damaging effects. Ban made the recommendation recently when U.N. scientists released a report saying the 40 leading industrial countries produced 46 percent of global greenhouse gas emissions in 2004.

    Starting in 2009, demand for water will outstrip supply in La Paz-El Alto, the government estimates. Without urgent, expensive projects -- only now in initial planning stages -- sustaining even the current population of 1.7 million will be impossible, said Oscar Paz, director of Bolivia's climate change program.

    Similar fears are heard in Quito, which gets less than 10 percent of its water directly from the Antizana and Cotopaxi glaciers but much more from watersheds they feed. The Ecuadorean capital is expected to run short in 2015, even with a battery of projects already under way, including new reservoirs.

    So Quitenos plan to cut a $1.1 billion tunnel through the cordillera and get Amazon basin runoff, says Edgar Ayabaca, director of the city's so-called "Western Rivers" project. He said work on the tunnel needs to begin by 2010 if supply is to continue to meet demand.

    Bogota's fate is less clear. Bogota gets 70 percent of its water from alpine paramo, a fragile sponge of soil and vegetation often shrouded in clouds, which could dry up in higher temperatures.

    Average temperatures in El Alto and its surrounding high plains have risen by as much as 1.4 degrees Fahrenheit over the past 30 years, estimates Felix Trujillo, head meteorologist at Bolivia's National Meteorological and Hydrological Service. And the melting of Andean equatorial glaciers has accelerated threefold since 1980, studies of Bolivian, Ecuadorean and Peruvian glaciers show.

    These glaciers serve as natural shock absorbers for rain, accumulating it in the wet season and releasing it in the dry season. Their loss will lead to less rain because they help pry precipitation loose from moist air rising up from the Amazon basin, scientists say.

    "All these ecosystems are changing very quickly. In fact, every year they change at a faster pace, which has all of us very alarmed," said Walter Vergara, the World Bank's lead climatologist for Latin America.

    Signs of impending ecological confusion are already evident. Two years ago, Ramirez said, he discovered mosquitoes, flies and even butterflies for the first time at the base of one of the glaciers.

    Another first: malaria, a lowland disease, has been reported in El Alto, which is 2 miles above sea level and gets occasional dustings of snow. An hour away at Zongo glacier, a rocky shoulder that cradled the glacier in 1991 is now 250 feet above it.

    Down in El Alto, tens of thousands of the 850,000 residents lack running water. How many exactly depends who you ask. Public works director, Edwin Chuquimia, says it's more than half. The public water utility, EPSAS, says it's far less.

    The city's two mostly dried-up rivers, trickling rivulets in wide washes, are putrid open sewers. Homemade wells abound. Forty percent of El Alto's water supply is lost to leaky pipes and theft, about the same rate as in Quito and Bogota.

    The golden rule of the leftist Morales' government: No one profits from water sales. But critics argue that such a philosophy doesn't provide enough cash for badly needed investments.

    Infrastructure projects totaling $60 million can guarantee El Alto-La Paz enough water for the next decade or so, said EPSAS director Victor Rico, but the utility has no more than $1.5 million a year to invest. Rico has secured a $5.5 million Venezuelan loan and said he has promises of a $5 million grant from the European Union, the possibility of $8 million in mixed Canadian financing, and possibly some Japanese and InterAmerican Development Bank money.

    A land use dispute in El Alto has already killed a $2 million Swiss-funded initiative in March that would have built two waste water treatment plants in El Alto, said Thomas Hentschel, the project manager.

    "It really hurt me, there was such need," he said. "Everything there was left up in the air."

    Copyright 2007 The Associated Press. All rights reserved.This material may not be published, broadcast, rewritten, or redistributed.


    Source from: edition.cnn.com

    Graphics chips rev up research results

    Friday, November 23, 2007

    Screenshot from The Witcher, Atari UK
    A better graphics card means PC games look more realistic

    Every serious PC gamer knows what a difference a good graphics card can make to the fun they have.

    But it is not just hardcore gamers who have recognised the worth of a PC graphics card.

    Increasing numbers of research scientists have woken up to their potential too.

    But the scientists in question are not using the cards to appreciate the detail in PC games such as The Witcher. Instead they are using them as cheap sources of supercomputer-class processing power.

    "They give a phenomenal bang for the buck," said Mike Giles, professor of scientific computing at the University of Oxford.

    Prof Giles said the way that graphics cards were built made them very good at the repetitive computational tasks many scientists use to test theories, models and predictions.

    Spot checks

    Professor Susan Hagness from the Department of Electrical and Computer Engineering at the University of Wisconsin-Madison has turned to graphics cards to quickly analyse breast scans to spot cancer in its early stages.

    Dr Hagness said official figures suggest x-rays missed 20% of the cancers that were present when a woman underwent screening.

    Mammography scan, SPL
    Women want scan results as quickly as possible

    Dr Hagness' team is using microwaves to scan tissue and then pumping the results through hardware made by Canadian firm Acceleware which bolts together several graphics cards into a mini computational cluster.

    The dedicated hardware meant that results emerged in a matter of hours rather than days, said Dr Hagness.

    This was essential when the technique began to be used in a clinical setting, she said.

    "Any woman who undergoes screening mammography wants the results straight away."

    Hardware helper

    Prof Giles, who is using graphics processors to do financial modelling, said the chips were very good at doing the same thing many different times.

    By contrast the Intel or AMD chips inside a typical desktop machine were good at doing many different things at the same time.

    Graphics cards had far more processing cores - which execute program instructions - than Intel or AMD chips, said Prof Giles, adding that each one of the cores could do one run of the same simple task.

    The financial models that Prof Giles is running test the same algorithm on each core but each one gets different random numbers as input.

    With the latest graphics processors having more than 100 processing cores that can add up to a lot of number crunching.

    Broker on phone, AP
    Modelling financial markets helps firms weather stock movements

    "Each core is logically very simple but its floating point capability is the same as an Intel chip," said Prof Giles.

    Developments in methods of writing code to handle the processing was also making graphics processors much more attractive, he said.

    "In the early days you could only use graphics cards for graphics," said Prof Giles.

    In particular, he said, graphics card maker Nvidia had released software tools called Cuda (Compute Unified Device Architecture) that made it much easier to write code.

    "For a while there were only hard-to-use shader languages," said Prof Giles, "Cuda is a much more usable development environment."

    Flow control

    By harnessing that processing power many scientists are getting results from simulations far faster than before.

    PhD student Tobias Brandvik and Dr Graham Pullan in the Whittle Laboratory at the University of Cambridge engineering department had sped up simulations of turbine blade designs by 40 times by using a few graphics cards.

    Each blade, said Dr Pullan, was custom designed for the jet or power plant in which they will be used.

    Rolls Royce Trent jet engine, PA
    Tiny improvements in efficiency have big rewards in turbine engines

    But, he said, even with this formidable level of complexity the design process models the turbulent air rather than accurately representing or resolving it.

    "With a cluster of graphical processing units, we could hope to use, say, 10 million cells," he said. The simulation run would take the same amount of time as existing models.

    "Then, we would resolve some of the larger turbulent eddies," said Dr Pullan. "In general, the more we resolve and the less we model, the more accurate the theory."

    An alternative would be to stick with 500,000 cells and try lots more blade designs or include blades upstream and downstream to get a better overall picture of air flowing through a turbine.

    Tiny improvements in design can have a huge payoff, said Dr Pullan.

    "It's all about making the absolute best efficiency possible," he said.

    "Improvements of even 1% in fuel consumption, for jet engines, or 1% in electricity power generated, for steam or gas turbines for power generation, is highly sought after."Luxury living Day in pictures It's quiz time!

    Source from: news.bbc.co.uk

    Topical waters

    art.plankton.gi.jpg

    LONDON, England (CNN) -- Research published last month paints an increasingly gloomy picture of the accelerating rate of climate change, raising genuine fears that efforts to combat carbon emissions may already be too late to restrict seismic changes in the earth's temperatures.

    Plankton bloom off the coast of Norway as seen from the ESA satellite Envisat on 10 June 2006.

    Compiled by a group of eminent scientists and published in the U.S. journal 'Proceedings of the National Academy of Sciences (PNAS)the report suggests that greenhouse gases are rising at a faster rate now than they did in the 1990's.

    The scientists cite three main causes for this alarming rise; Growth in the world economy, increased fossil fuel emissions since 2000 and a decline in the efficiency of the ocean and land 'sinks' to absorb carbon emissions.

    In the wake of this troubling new data about ocean carbon absorption, a range of geo-engineering solutions are being hotly debated in the scientific community and piloted by eco-businesses. The hope is that by intervening in the ocean's eco-system we will be able to reverse or stabilize the rates of growth in global warming.

    The oceans are natural 'CO2 sinks' (a reservoir that absorbs atmospheric carbon). Phytoplankton -- microscopic organisms that congregate near the ocean surface - absorb atmospheric CO2 through photosynthesis. At the end of their lifetime -- usually only a few days -- they fall to the ocean floor carrying with them the CO2.

    Scientists have known for some time that large swathes of the earth's oceans harbor extremely low densities of phytoplankton. These areas are known as HNLC (high-nutrient, low-chlorophyll) zones and are thought to be caused by a scarcity of iron.

    This iron-deficiency theory was first postulated in the 1930's by English scientist Joseph Hart.

    But it wasn't until the 1980's that the American oceanographer John Martin measured the iron content of the seawater in HNLC zones and found negligible amounts.

    He argued that the sea gets it iron from dust swept into the sea from the land, and that wind currents weren't carrying iron to HNLC areas. Martin tested his hypothesis in Antarctica and found that phytoplankton thrived in jars of seawater infused with iron.

    Martin's discoveries set in motion further research in this area and it was in the spirit of his work that a ship named Weatherbird II set sail for the tropical waters of the eastern Atlantic earlier this month.

    Its mission is to carry out Martin's experiment on a much grander scale, pouring iron ore into the ocean in an attempt to stimulate plankton growth and assess the wider effects on sea life.

    The pilot study has been organized by Planktos, a Californian-based eco-restoration company.

    "This really might be an incredible solution," Planktos CEO Russ George told CNN.

    "In climate change we talk about a tipping point, but in oceans and ocean life we are far over that tipping point," he said.

    George has been involved in the carbon credit business for over 30 years. He started a tree planting company in British Columbia and estimates that he has planted over a quarter of a billion trees in Canada alone. A subsidiary company, KlimaFa Ltd is currently restoring forests in the European Union with over 100,000 hectares of land in Hungary being replenished.

    It was when the Kyoto accord was first signed in 1997 that George started thinking of new ways to sell carbon credits and started researching iron fertilization. He is confident that it will be a success.

    "20 years and 100-200 million dollars of public funds have identified this iron tonic solution as a way to restore the productivity of the ocean," he said.

    Yet Planktos is a constant target for groups who don't buy into the idea of carbon offsets.

    In a joint statement in August 2006 Greenpeace, the WWF and Friends of the Earth said: "Carbon offsets should only be seen as a last resort" and that "purchasing offsets can be seen as an easy way out for governments, businesses and individuals to continue polluting without making changes to the way they do business or their behavior".

    George has had to put up with protesters continually claiming that the technology that Planktos is trialing isn't regulated.

    "Any new technology in climate change that produces offsets has to go through a multi-tiered independent third party, transparent certification process. It's the most rigorous regulatory process on earth for any new technology," said George.

    But opponents remain unconvinced. The Sea Shepherd Conservation Society, a vocal critic of Planktos, has, according to George, threatened to 'intercept' the Weatherbird II if attempts are made to carry out research.

    George believes that the technology is the world's best hope. "We've lost 17 percent of all plant life in the Atlantic, 26 percent in the North Pacific and in the sub-tropical oceans 50 percent or more of plant life has disappeared," he said.

    The pilot study is scheduled to last several months and the results will be keenly monitored by scientists.

    CNN spoke to Professor Jef Huisman from the Institute for Biodiversity and Ecosystem Dynamics in the Netherlands about iron fertilization.

    "It is often discussed among scientists and we have mixed feelings about it," he said. "We know it could potentially reduce the levels of CO2 in the atmosphere, but we don't know what the consequences are."

    Asked about the research about to be conducted by Planktos, Professor Huisman said: I think it's an interesting idea as well as a dangerous idea. Interesting because we know that if we can increase the primary production and there will be a larger intake of carbon dioxide in to the ocean.

    "But is also dangerous. Just as you fertilize on land you will change the eco-system. Whereas we have experience of what happens in a meadow, we have no experience of what would happen with the eco-system species composition in the ocean. What happens if you do large scale iron fertilization? We have no idea which species are going to profit or whether it will cause harmful algal blooms.

    Professor Huisman predicts that once the iron goes into the ocean that there will be a strong increase in phytoplankton species.

    "I would expect the small phytoplankton species -- that have a fast growth rate - will be there first," he said. "Secondly you would have slow plankton species that would catch up and start grazing on the phytoplankton species."

    Huisman, an expert in aquatic microbiology, is currently researching the phenomenon of the deep chlorophyll maximum -- a layer of phytoplankton found in tropical and sub-tropical oceans. He thinks that iron fertilization studies should be done in water tanks before heading out to sea.

    "You could put an entire community from the pacific ocean in a 50 meter tank. There you could have a controlled experiment and the iron will not be eroded by ocean currents," he said.

    Despite constant haranguing from eco-protesters, Planktos' Russ George remains defiant and somewhat evangelical about the potential of "iron-seeding".

    "We are all here at the behest of the green plants in the ocean," he said. "4 percent of the planet is covered in rainforest. 72 percent of the planet is ocean. In the last five years we've lost all the rainforests worth of ocean plant life."

    If the pilot study is successful, George envisages container ships "re-booting" the oceans back to levels they where at 30 years ago. "It is the single great hope we have," he said.

    According to two eminent British environmental thinkers, increasing the uptake of CO2 by the oceans could be effected by vast vertical pipes beneath the surface of the ocean.

    Writing in the journal Nature, James Lovelock, creator of the Gaia hypothesis and Chris Rapley head of London's Science Museum argue that pumping nutrient-rich water from the depths of the oceans up to the sea's surface would allow the ocean to absorb more CO2.

    The idea is to have literally millions of pipes -- 100 meters long and 3 meters wide -- reaching down to the depths of the ocean. They could, the inventors suggest, sequester a sizable chunk of annual human carbon emissions.

    Professor Huisman isn't so sure that the plan would work though. "Concentrations of CO2 are higher in the deeper oceans," he said. "The major effect would be that carbon dioxide levels deep in the ocean would be brought to the surface. It is the opposite of what you would want."

    But he remains positive about utilizing the oceans. "If you could increase the uptake of the oceans it would really help with the greenhouse effect."


    Source from: edition.cnn.com

    Graphics chips rev up research results

    Friday, November 16, 2007

    Screenshot from The Witcher, Atari UK
    A better graphics card means PC games look more realistic

    Every serious PC gamer knows what a difference a good graphics card can make to the fun they have.

    But it is not just hardcore gamers who have recognised the worth of a PC graphics card.

    Increasing numbers of research scientists have woken up to their potential too.

    But the scientists in question are not using the cards to appreciate the detail in PC games such as The Witcher. Instead they are using them as cheap sources of supercomputer-class processing power.

    "They give a phenomenal bang for the buck," said Mike Giles, professor of scientific computing at the University of Oxford.

    Prof Giles said the way that graphics cards were built made them very good at the repetitive computational tasks many scientists use to test theories, models and predictions.

    Spot checks

    Professor Susan Hagness from the Department of Electrical and Computer Engineering at the University of Wisconsin-Madison has turned to graphics cards to quickly analyse breast scans to spot cancer in its early stages.

    Dr Hagness said official figures suggest x-rays missed 20% of the cancers that were present when a woman underwent screening.

    Mammography scan, SPL
    Women want scan results as quickly as possible

    Dr Hagness' team is using microwaves to scan tissue and then pumping the results through hardware made by Canadian firm Acceleware which bolts together several graphics cards into a mini computational cluster.

    The dedicated hardware meant that results emerged in a matter of hours rather than days, said Dr Hagness.

    This was essential when the technique began to be used in a clinical setting, she said.

    "Any woman who undergoes screening mammography wants the results straight away."

    Hardware helper

    Prof Giles, who is using graphics processors to do financial modelling, said the chips were very good at doing the same thing many different times.

    By contrast the Intel or AMD chips inside a typical desktop machine were good at doing many different things at the same time.

    Graphics cards had far more processing cores - which execute program instructions - than Intel or AMD chips, said Prof Giles, adding that each one of the cores could do one run of the same simple task.

    The financial models that Prof Giles is running test the same algorithm on each core but each one gets different random numbers as input.

    With the latest graphics processors having more than 100 processing cores that can add up to a lot of number crunching.

    Broker on phone, AP
    Modelling financial markets helps firms weather stock movements

    "Each core is logically very simple but its floating point capability is the same as an Intel chip," said Prof Giles.

    Developments in methods of writing code to handle the processing was also making graphics processors much more attractive, he said.

    "In the early days you could only use graphics cards for graphics," said Prof Giles.

    In particular, he said, graphics card maker Nvidia had released software tools called Cuda (Compute Unified Device Architecture) that made it much easier to write code.

    "For a while there were only hard-to-use shader languages," said Prof Giles, "Cuda is a much more usable development environment."

    Flow control

    By harnessing that processing power many scientists are getting results from simulations far faster than before.

    PhD student Tobias Brandvik and Dr Graham Pullan in the Whittle Laboratory at the University of Cambridge engineering department had sped up simulations of turbine blade designs by 40 times by using a few graphics cards.

    Each blade, said Dr Pullan, was custom designed for the jet or power plant in which they will be used.

    Rolls Royce Trent jet engine, PA
    Tiny improvements in efficiency have big rewards in turbine engines

    But, he said, even with this formidable level of complexity the design process models the turbulent air rather than accurately representing or resolving it.

    "With a cluster of graphical processing units, we could hope to use, say, 10 million cells," he said. The simulation run would take the same amount of time as existing models.

    "Then, we would resolve some of the larger turbulent eddies," said Dr Pullan. "In general, the more we resolve and the less we model, the more accurate the theory."

    An alternative would be to stick with 500,000 cells and try lots more blade designs or include blades upstream and downstream to get a better overall picture of air flowing through a turbine.

    Tiny improvements in design can have a huge payoff, said Dr Pullan.

    "It's all about making the absolute best efficiency possible," he said.

    "Improvements of even 1% in fuel consumption, for jet engines, or 1% in electricity power generated, for steam or gas turbines for power generation, is highly sought after."Day in pictures Russian viewpoints Entente cordiale?

    Source from: news.bbc.co.uk

    Switching on the digital world

    Sixty years ago two scientists would start a month of experiments that would come to shape the modern world.

    The period of work by John Bardeen and Walter Brattain, working under William Shockley, would become known as the "miracle month" and resulted in the world's first working transistor.

    "They demonstrated something that became the basic mechanism for our entire electronic industry," said Dr Art Ramirez of Bell Labs, the location of the 1947 invention.

    "They're in aircraft, automobiles, digital cameras and microwave ovens," said Jeff Katz, a guide at the Computer History Museum in Silicon Valley.

    "In every house there is somewhere in the region of 50 to 100 million transistors, and that's probably a conservative estimate," he said. "If you start including computers and digital cameras you are probably approaching one trillion."

    Computing age

    Transistors are used to control the flow of electricity in a circuit.

    The flow between two terminals - the source and the drain - is controlled by applying a current or voltage to the third terminal - the gate.

    "It's very much like a water faucet. The gate is the handle and the faucet controls the flow of electrons between the source and the drain," said Dr Ramirez.

    The tiny devices have two key properties which make them attractive to electronics engineers: they can amplify a signal and they can act like a switch.

    This ability to boost a signal makes them attractive to the communications and broadcast industry whilst their capability to turn on and off quickly has made them the component of choice for computation.

    Their development came from a world recovering from the Second World War.

    "During the war there was a lot of electronics work going on for communications and computation mainly for military purposes," said Mr Katz.

    For example, in December 1943, the British built Colossus - the first electronic computer - to break messages passed by the German high command.

    "This culminated in the invention of the ENIAC computer," said Mr Katz.

    The ENIAC was installed at the University of Pennsylvania in 1946 and was the first large-scale programmable digital computer.

    Like Colossus, instead of transistors it used vacuum tubes, also known as thermionic valves, which were delicate structures that looked similar to light bulbs.

    "It filled a room, the power consumption was huge, it had nearly 18,000 tubes but it had very, very limited functionality," said George Scalise president of the Semiconductor Industry Association (SIA).

    "There was no way of scaling up the computer without finding some way to make the devices that allowed it to function lower cost, lower power, smaller and more reliable."

    Crude device

    As a result scientists across the world began to look for an alternative.

    One of the leading groups was based at the Bell Telephone Laboratories in New Jersey.

    Sonotone 1010 hearing aid
    The Sonotone 1010 was the first transistorised product

    There, a theoretician known as William Shockley led the solid state physics group, which included other scientists such as John Bardeen and Walter Brattain.

    After hiring Bardeen, Shockley set him off on a project to understand the interaction of electrons on the surfaces of semiconductors, but personal differences meant the new recruit soon went his own way.

    "Bardeen really didn't get along with Shockley so he started working with Brattain who was an experimentalist," said Dr Ramirez.

    Over 18 months the pair went about investigating these "surface states" using various experimental set-ups.

    "It was a series of experiments that led to a deeper understanding of how to build a device that actually switched," he said.

    The work led to their miracle month and culminated with them showing off the first working transistor two days before Christmas in 1947.

    The half-inch (1.25cm) device, made from germanium with two gold contacts held in place by a plastic wedge, bore little resemblance to the tiny precise switches produced today.

    "I have seen a replica been made of the first transistor in the same way as it was made and it's remarkably crude," said Mr Katz.

    However, it was enough to convince the hierarchy of Bell Labs and after filing patents it was announced to the public on 1 July 1948

    "This was announced to fantastic fanfare," said Dr Ramirez. "Reading about it reminds me of the way that Steve Jobs rolls out the iPod."

    Silicon block

    Over the next few years, Shockley modified the design of the transistor into a device closer to the design used today.

    "He made such a key contribution that he was a co-recipient of the Nobel Prize [for Physics] in 1956," said Dr Ramirez.

    With the invention of the transistor many new applications become possible, including the first transistor-based hearing aid, made by Sonotone This was followed by the first mass market device - the transistor radio.

    "They were about the size of a paperback book today but the replaced something that was about the size of a bread toaster," said Mr Katz.

    They were also used for military equipment, televisions and in communications networks.

    Initially, transistors were built separately and then wired together to make circuits.

    But in 1958, Jack Kilby, a scientist at Texas Instruments, invented the integrated circuit, a circuit where all of the components were built onto a single block of material, commonly silicon.

    The transistor had found its natural home and its development has continued ever since.

    Elements that used to be measured in millimetres and even centimetres in the first device are now measured in nanometres (billionths of a metre).

    Intel's next generation of chip, for example will pack more than four hundred million transistors into an area the size of a postage stamp.

    The silicon industry is now worth almost $300bn a year and plays a key role in almost every area of life from computing and health care to entertainment and global communications.

    "Nothing else could have transformed the world to the extent that this has," said Mr Scalise.In pictures Detroit Blues It's quiz time!

    Source from: news.bbc.co.uk

    Stem cells cloned from monkey eggs

    art.rhesus.macaque.gi.jpg

    NEW YORK (AP) -- Gleaning stem cells from cloned monkey embryos, as a team of Oregon researchers has done, is an impressive step. But it probably won't lead to medical treatments any time soon.

    Scientists merged skin cells of a rhesus macaque male with unfertilized monkey eggs that had the DNA removed.

    One hurdle is ethical and political. The destruction of human embryos to produce stem cells has aroused opposition to human embryonic stem cell research, and it led the Bush administration to restrict federal funding for it. Scientists say that has slowed science in this effort.

    Another hurdle is the inefficiency of the process. Even if the method described by scientists Wednesday works in humans, it would demand too much of a precious resource -- women's unfertilized eggs.

    The promise of producing stem cells by cloning is that they can be genetically matched to a particular patient. So theoretically, doctors should be able to transplant tissue created from them into that person without tissue rejection. And presumably, such transplants could help treat such conditions as diabetes and spinal cord injury.

    The process used in the new experiment is "quite inefficient," Shoukhrat Mitalipov of the Oregon National Primate Research Center in Portland told reporters Wednesday.

    He and his colleagues reported getting two batches of stem cells that required using about 150 monkey eggs apiece. That's far too many if one hopes to use human unfertilized eggs, which are cumbersome to obtain from women.

    If further work can get that down to maybe five to 10 eggs per stem cell batch, "we will be closer to clinical applications," Mitalipov said.

    "I am quite sure it will work in humans," he added.

    But then there's another issue -- showing that such stem cells really can be used to treat diseases safely. Mitalipov said he plans to do diabetes studies in monkeys.

    For now, he and other scientists said, the new work is valuable for showing that stem cells can be produced through cloning in monkeys. It's been done in mice, but scientists had long been frustrated in their attempts in primates, where the research would be more relevant to humans.

    The new work was published online Wednesday by the scientific journal Nature. The success was reported earlier this year at a research meeting in Australia, where it received limited media coverage. The results were given new attention Tuesday by a London newspaper, The Independent.

    Dr. George Daley of the Harvard Stem Cell Institute, who was familiar with the work, told The Associated Press in an e-mail that it was a "a very important demonstration" that the process is feasible in primates.

    Mitalipov's team merged skin cells of a 9-year-old rhesus macaque male with unfertilized monkey eggs that had the DNA removed. The eggs, now operating with DNA from the skin cells, grew into early embryos in the laboratory. Stem cells were recovered from these embryos.

    The researchers have applied for a patent on their procedure.

    Mitalipov said separate experiments obtained monkey stem cells from a different process called parthenogenesis, in which an egg grows into an early embryo without any genetic contribution from a male. The stem cells were genetic matches to the females that produced the eggs, he said, and early experiments suggest stem cells derived this way may someday prove useful for treating disease in women.

    Nature took the unusual step of asking a separate group of scientists to verify Mitalipov's cloning results, and it published the verification along with Mitalipov's paper.

    In an e-mail, the journal cited the highly publicized 2004 fraud that came out of South Korea, where researchers led by Hwang woo-Suk claimed to have produced stem cells from a cloned human embryo.

    The journal said the research to verify Mitalipov's findings didn't signal mistrust, but noted that questions would likely be raised, and "we view this as a relatively straightforward way of putting these questions to rest."

    The verification study, by David Cram and others at the Monash University in Australia, used DNA analysis of the male macaque, the two monkeys whose eggs were used to create embryos, and the stem cells. The result "demonstrates beyond any doubt" that the stem cells came from cloned embryos, the Australians wrote in their Nature paper.

    Copyright 2007 The Associated Press. All rights reserved.This material may not be published, broadcast, rewritten, or redistributed.


    Source from: edition.cnn.com